Helpful Scripts
Descriptions and usage for both in-house and external short scripts that may appeal to a large number of PMI users.
Usage
The fastalengthcounter.pl script counts the number of genetic sequence characters in a fasta format file. The count is then printed to the command ...
Thu, Jul 13, 2017 at 2:03 PM
Usage
The fastaStats script reads a single fasta file and prints information about the file onto the command line.
Command Line:
fastaStats is ...
Thu, Jul 13, 2017 at 2:12 PM
Usage
The fastqStats script reads a single fastq file and prints information about the file onto the command line.
Command Line:
fastqStats is ...
Thu, Jul 13, 2017 at 2:23 PM
Usage
The getReadLength script finds the max character length for the genetic sequence characters on a single line and returns length to the command line...
Fri, Jul 14, 2017 at 11:50 AM
Usage
The slurminfo script prints out various pieces of information regarding Slurm nodes and partitions on the cluster. The information is printed in a ...
Wed, Nov 29, 2017 at 4:25 PM
This page is a quick catalogue of the scripts in the Aspen clusters tnorth scratch bin folder. Many descriptions are subject to change and eventually these ...
Thu, Feb 9, 2023 at 2:45 PM