Helpful Scripts

Descriptions and usage for both in-house and external short scripts that may appeal to a large number of PMI users.

fastalengthcounter.pl
Usage The fastalengthcounter.pl script counts the number of genetic sequence characters in a fasta format file. The count is then printed to the command ...
Thu, Jul 13, 2017 at 2:03 PM
fastaStats
Usage The fastaStats script reads a single fasta file and prints information about the file onto the command line. Command Line: fastaStats is ...
Thu, Jul 13, 2017 at 2:12 PM
fastqStats
Usage The fastqStats script reads a single fastq file and prints information about the file onto the command line. Command Line: fastqStats is ...
Thu, Jul 13, 2017 at 2:23 PM
getReadLength
Usage The getReadLength script finds the max character length for the genetic sequence characters on a single line and returns length to the command line...
Fri, Jul 14, 2017 at 11:50 AM
slurminfo
Usage The slurminfo script prints out various pieces of information regarding Slurm nodes and partitions on the cluster. The information is printed in a ...
Wed, Nov 29, 2017 at 4:25 PM